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Remote Nonprofit Accounting Jobs in San Diego, CA

Remote nonprofit accounting roles you can do from San Diego, California.

Browse remote nonprofit accounting positions open to candidates in San Diego, California — many are fully remote roles suitable for workers based in California. Many are open across the US (some worldwide); check each listing's eligibility.

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621 jobs · 81 new in the last 7 days · Updated Oct 29, 2026

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Grant Accountant

Remote in San Diego, CA Full Time $50K – $65K/yr
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Financial Analyst

Remote in San Diego, CA Full Time $60.6K/yr
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Accountant

Remote in San Diego, CA Full Time $118K – $130K/yr
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Assurance Manager - Employee Benefit Plans

Remote in San Diego, CA Full Time Est. $90K – $125K/yr
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Nonprofit Accountant

Remote in San Diego, CA Contract $35 – $42/hr
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Accountant

Remote in San Diego, CA Full Time Est. $65K – $90K/yr
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Senior Accountant/Financial Analyst

Remote in San Diego, CA Full Time $85K – $100K/yr
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Senior Accountant (Remote in US)

Remote in San Diego, CA Full Time $80K – $105K/yr
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REMOTE Audit Manager | Up to $175K salary

Remote in San Diego, CA Full Time $130K – $175K/yr
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Cost Accountant (Federal Grants)

Remote in San Diego, CA Full Time Est. $65K – $90K/yr
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Junior Accountant

Remote in San Diego, CA Full Time $43K – $48K/yr
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Senior Staff Accountant

Remote in San Diego, CA Full Time $77.9K – $94.3K/yr
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Tax Manager - NonProfit

Remote in San Diego, CA Full Time $90K – $150K/yr
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Staff Accountant

Remote in San Diego, CA Full Time $48K/yr
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Bookkeeper

Remote in San Diego, CA Full Time Est. $40K – $55K/yr
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Senior Accountant

Remote in San Diego, CA Full Time $80K – $100K/yr
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Remote Audit Manager | Non-Profit & Single Audit

Remote in San Diego, CA Full Time $175K/yr
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Financial Analyst I

Remote in San Diego, CA Internship Est. $40K – $55K/yr
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Tax Senior - Non-Profit Organizations

Remote in San Diego, CA Full Time $80K – $110K/yr
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Senior Accountant

Remote in San Diego, CA Contract $50 – $60/hr

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