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Remote Nonprofit Accounting Jobs in San Francisco, CA

Remote nonprofit accounting roles you can do from San Francisco, California.

Browse remote nonprofit accounting positions open to candidates in San Francisco, California — many are fully remote roles suitable for workers based in California. Many are open across the US (some worldwide); check each listing's eligibility.

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621 jobs · 80 new in the last 7 days · Updated Oct 29, 2026

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Grant Accountant

Remote in San Francisco, CA Full Time $50K – $65K/yr
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Financial Analyst

Remote in San Francisco, CA Full Time $60.6K/yr
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Accountant

Remote in San Francisco, CA Full Time $118K – $130K/yr
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Assurance Manager - Employee Benefit Plans

Remote in San Francisco, CA Full Time Est. $90K – $125K/yr
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Nonprofit Accountant

Remote in San Francisco, CA Contract $35 – $42/hr
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Accountant

Remote in San Francisco, CA Full Time Est. $65K – $90K/yr
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Senior Accountant/Financial Analyst

Remote in San Francisco, CA Full Time $85K – $100K/yr
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Senior Accountant (Remote in US)

Remote in San Francisco, CA Full Time $80K – $105K/yr
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REMOTE Audit Manager | Up to $175K salary

Remote in San Francisco, CA Full Time $130K – $175K/yr
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Cost Accountant (Federal Grants)

Remote in San Francisco, CA Full Time Est. $65K – $90K/yr
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Junior Accountant

Remote in San Francisco, CA Full Time $43K – $48K/yr
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Senior Staff Accountant

Remote in San Francisco, CA Full Time $77.9K – $94.3K/yr
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Tax Manager - NonProfit

Remote in San Francisco, CA Full Time $90K – $150K/yr
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Staff Accountant

Remote in San Francisco, CA Full Time $48K/yr
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Bookkeeper

Remote in San Francisco, CA Full Time Est. $40K – $55K/yr
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Senior Accountant

Remote in San Francisco, CA Full Time $80K – $100K/yr
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Remote Audit Manager | Non-Profit & Single Audit

Remote in San Francisco, CA Full Time $175K/yr
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Financial Analyst I

Remote in San Francisco, CA Internship Est. $40K – $55K/yr
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Tax Senior - Non-Profit Organizations

Remote in San Francisco, CA Full Time $80K – $110K/yr
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Senior Accountant

Remote in San Francisco, CA Contract $50 – $60/hr

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